SNP Detail For rs1171616
1.Mapping Information
Human SNP ID rs1171616
Human chromosome chr10
Human SNP position 59708831
Pig chromosome chr14
Pig SNP position 68082632
2.Annotation Information
PubMed ID26068415
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26068415
StudyGenome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.
Disease/TraitAcylcarnitine levels
Initial sampleup to 7,478 European ancestry individuals
Replication sample1,182 European ancestry individuals
Region10q21.2
Chromosome idchr10
Chromosome position59708831
Reported geneSLC16A9
Mapped geneSLC16A9
Upstream gene id
Downstream gene id
SNP gene ids220963
Upstream gene distance
Downstream gene distance
SNP risk allelers1171616-T
SNPsrs1171616
Merged
SNP id current1171616
Contextintron_variant
Intergenic0
Allele frequency0.7835
P value0.0000000006
Pvalue mlog9.22184874961635
P value text(Propionylcarnitine)
Or beta0.0979
%95 Ci[0.067-0.129] unit increase
PlatformAffymetrix, Illumina [at least 296619] (imputed)
CNVN
Mapped traitacylcarnitine measurement, blood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005059, http://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002961