Human SNP ID | rs1171616 |
---|---|
Human chromosome | chr10 |
Human SNP position | 59708831 |
Pig chromosome | chr14 |
Pig SNP position | 68082632 |
PubMed ID | 26068415 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26068415 |
Study | Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels. |
Disease/Trait | Acylcarnitine levels |
Initial sample | up to 7,478 European ancestry individuals |
Replication sample | 1,182 European ancestry individuals |
Region | 10q21.2 |
Chromosome id | chr10 |
Chromosome position | 59708831 |
Reported gene | SLC16A9 |
Mapped gene | SLC16A9 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 220963 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1171616-T |
SNPs | rs1171616 |
Merged | |
SNP id current | 1171616 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.7835 |
P value | 0.0000000006 |
Pvalue mlog | 9.22184874961635 |
P value text | (Propionylcarnitine) |
Or beta | 0.0979 |
%95 Ci | [0.067-0.129] unit increase |
Platform | Affymetrix, Illumina [at least 296619] (imputed) |
CNV | N |
Mapped trait | acylcarnitine measurement, blood metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005059, http://www.ebi.ac.uk/efo/EFO_0005664 |
Study accession | GCST002961 |