SNP Detail For rs11715566
1.Mapping Information
Human SNP ID rs11715566
Human chromosome chr3
Human SNP position 117843589
Pig chromosome JH118461-1
Pig SNP position 86328
2.Annotation Information
PubMed ID25231870
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25231870
StudyParent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
Disease/TraitMenarche (age at onset)
Initial sampleUp to 182,413 European ancestry females
Replication sampleNA
Region3q13.32
Chromosome idchr3
Chromosome position117843589
Reported geneIGSF11
Mapped geneLOC101926953 - LOC105374058
Upstream gene id101926953
Downstream gene id105374058
SNP gene ids
Upstream gene distance49967
Downstream gene distance645211
SNP risk allelers11715566-T
SNPsrs11715566
Merged0
SNP id current11715566
Contextintron_variant
Intergenic1
Allele frequency0.5
P value2E-27
Pvalue mlog26.698970004336
P value text
Or beta0.05
%95 Ci[0.04-0.06] unit increase
PlatformAffymetrix, Illumina [2441815] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST002541