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SNP Detail For rs117126031
1.Mapping Information
| Human SNP ID | rs117126031 |
|---|---|
| Human chromosome | chr20 |
| Human SNP position | 49442326 |
| Pig chromosome | chr17 |
| Pig SNP position | 57425926 |
2.Annotation Information
| PubMed ID | 25663218 |
|---|---|
| Journal | Circ Cardiovasc Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/25663218 |
| Study | Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI. |
| Disease/Trait | White matter hyperintensity burden |
| Initial sample | 17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals |
| Replication sample | NA |
| Region | 20q13.13 |
| Chromosome id | chr20 |
| Chromosome position | 49442326 |
| Reported gene | KCNB1 |
| Mapped gene | KCNB1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 3745 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs117126031-A |
| SNPs | rs117126031 |
| Merged | |
| SNP id current | 117126031 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.02 |
| P value | 0.000006 |
| Pvalue mlog | 5.22184874961635 |
| P value text | |
| Or beta | |
| %95 Ci | |
| Platform | Affymetrix, Illumina [14227402] (imputed) |
| CNV | N |
| Mapped trait | white matter hyperintensity measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005665 |
| Study accession | GCST003013 |
| PubMed ID | 25663218 |
| Journal | Circ Cardiovasc Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/25663218 |
| Study | Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI. |
| Disease/Trait | White matter hyperintensity burden |
| Initial sample | 17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals |
| Replication sample | NA |
| Region | 20q13.13 |
| Chromosome id | chr20 |
| Chromosome position | 49442326 |
| Reported gene | KCNB1 |
| Mapped gene | KCNB1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 3745 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs117126031-A |
| SNPs | rs117126031 |
| Merged | |
| SNP id current | 117126031 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.02 |
| P value | 0.000001 |
| Pvalue mlog | 6 |
| P value text | (EA) |
| Or beta | |
| %95 Ci | |
| Platform | Affymetrix, Illumina [14227402] (imputed) |
| CNV | N |
| Mapped trait | white matter hyperintensity measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005665 |
| Study accession | GCST003013 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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