SNP Detail For rs11708026
1.Mapping Information
Human SNP ID rs11708026
Human chromosome chr3
Human SNP position 18700310
Pig chromosome chr13
Pig SNP position 6560046
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region3p24.3
Chromosome idchr3
Chromosome position18700310
Reported geneNR
Mapped geneLOC101927805 - LOC105376976
Upstream gene id101927805
Downstream gene id105376976
SNP gene ids
Upstream gene distance93123
Downstream gene distance45667
SNP risk allelers11708026-?
SNPsrs11708026
Merged
SNP id current11708026
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.00000000008
Pvalue mlog10.096910013008
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043