Human SNP ID | rs117041666 |
---|---|
Human chromosome | chr5 |
Human SNP position | 76053677 |
Pig chromosome | chr2 |
Pig SNP position | 86603385 |
PubMed ID | 26053186 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26053186 |
Study | Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer. |
Disease/Trait | 3-hydroxypropylmercapturic acid levels in smokers |
Initial sample | 362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals |
Replication sample | NA |
Region | 5q13.3 |
Chromosome id | chr5 |
Chromosome position | 76053677 |
Reported gene | NR |
Mapped gene | LOC100996384 - LOC105379041 |
Upstream gene id | 100996384 |
Downstream gene id | 105379041 |
SNP gene ids | |
Upstream gene distance | 109379 |
Downstream gene distance | 27735 |
SNP risk allele | rs117041666-? |
SNPs | rs117041666 |
Merged | |
SNP id current | 117041666 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (EA) |
Or beta | 1.1009 |
%95 Ci | [0.65-1.55] unit decrease |
Platform | Illumina [up to 11892802] (imputed) |
CNV | N |
Mapped trait | smoking behavior, 3-hydroxypropylmercapturic acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014 |
Study accession | GCST002956 |