SNP Detail For rs117041666
1.Mapping Information
Human SNP ID rs117041666
Human chromosome chr5
Human SNP position 76053677
Pig chromosome chr2
Pig SNP position 86603385
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region5q13.3
Chromosome idchr5
Chromosome position76053677
Reported geneNR
Mapped geneLOC100996384 - LOC105379041
Upstream gene id100996384
Downstream gene id105379041
SNP gene ids
Upstream gene distance109379
Downstream gene distance27735
SNP risk allelers117041666-?
SNPsrs117041666
Merged
SNP id current117041666
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(EA)
Or beta1.1009
%95 Ci[0.65-1.55] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956