SNP Detail For rs11691652
1.Mapping Information
Human SNP ID rs11691652
Human chromosome chr2
Human SNP position 227720182
Pig chromosome chr15
Pig SNP position 142975539
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region2q36.3
Chromosome idchr2
Chromosome position227720182
Reported geneSLC19A3
Mapped geneSLC19A3 - CCL20
Upstream gene id80704
Downstream gene id6364
SNP gene ids
Upstream gene distance2153
Downstream gene distance93660
SNP risk allelers11691652-C
SNPsrs11691652
Merged0
SNP id current11691652
Contextupstream_gene_variant
Intergenic1
Allele frequency0.189
P value0.000008
Pvalue mlog5.09691001300805
P value text(Cortisol )
Or beta0.03
%95 Ci[NR] ng/mL increase
PlatformIllumina [899892]
CNVN
Mapped traitcortisol secretion measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004642
Study accessionGCST001762