SNP Detail For rs116909374
1.Mapping Information
Human SNP ID rs116909374
Human chromosome chr14
Human SNP position 36269155
Pig chromosome chr7
Pig SNP position 68625633
2.Annotation Information
PubMed ID22267200
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22267200
StudyDiscovery of common variants associated with low TSH levels and thyroid cancer risk.
Disease/TraitThyroid cancer
Initial sample27,758 European ancestry individuals
Replication sample1,156 European ancestry cases, up to 42,617 European ancestry controls
Region14q13.3
Chromosome idchr14
Chromosome position36269155
Reported geneMBIP
Mapped geneLOC101927199 - LOC102723418
Upstream gene id101927199
Downstream gene id102723418
SNP gene ids
Upstream gene distance33793
Downstream gene distance4165
SNP risk allelers116909374-T
SNPsrs116909374
Merged0
SNP id current116909374
Contextintergenic_variant
Intergenic1
Allele frequency0.017
P value0.00000000005
Pvalue mlog10.3010299956639
P value text
Or beta2.09
%95 Ci[1.68-2.60]
PlatformIllumina [~ 16000000] (imputed)
CNVN
Mapped traitthyroid carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002892
Study accessionGCST001382