Human SNP ID | rs116843064 |
---|---|
Human chromosome | chr19 |
Human SNP position | 8364439 |
Pig chromosome | chr2 |
Pig SNP position | 71279375 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | HDL cholesterol |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 8364439 |
Reported gene | ANGPTL4 |
Mapped gene | ANGPTL4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 51129 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs116843064-A |
SNPs | rs116843064 |
Merged | |
SNP id current | 116843064 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.03 |
P value | 0.00000000000002 |
Pvalue mlog | 13.698970004336 |
P value text | |
Or beta | 0.178 |
%95 Ci | [0.13-0.22] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST002899 |
PubMed ID | 25961943 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | Triglycerides |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 8364439 |
Reported gene | ANGPTL4 |
Mapped gene | ANGPTL4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 51129 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs116843064-G |
SNPs | rs116843064 |
Merged | |
SNP id current | 116843064 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.97 |
P value | 0.000000000000004 |
Pvalue mlog | 14.397940008672 |
P value text | |
Or beta | 0.183 |
%95 Ci | [0.14-0.23] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST002897 |