SNP Detail For rs116843064
1.Mapping Information
Human SNP ID rs116843064
Human chromosome chr19
Human SNP position 8364439
Pig chromosome chr2
Pig SNP position 71279375
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitHDL cholesterol
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region19p13.2
Chromosome idchr19
Chromosome position8364439
Reported geneANGPTL4
Mapped geneANGPTL4
Upstream gene id
Downstream gene id
SNP gene ids51129
Upstream gene distance
Downstream gene distance
SNP risk allelers116843064-A
SNPsrs116843064
Merged
SNP id current116843064
Contextmissense_variant
Intergenic0
Allele frequency0.03
P value0.00000000000002
Pvalue mlog13.698970004336
P value text
Or beta0.178
%95 Ci[0.13-0.22] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST002899
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitTriglycerides
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region19p13.2
Chromosome idchr19
Chromosome position8364439
Reported geneANGPTL4
Mapped geneANGPTL4
Upstream gene id
Downstream gene id
SNP gene ids51129
Upstream gene distance
Downstream gene distance
SNP risk allelers116843064-G
SNPsrs116843064
Merged
SNP id current116843064
Contextmissense_variant
Intergenic0
Allele frequency0.97
P value0.000000000000004
Pvalue mlog14.397940008672
P value text
Or beta0.183
%95 Ci[0.14-0.23] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST002897