SNP Detail For rs11681525
1.Mapping Information
Human SNP ID rs11681525
Human chromosome chr2
Human SNP position 144734815
Pig chromosome chr15
Pig SNP position 7689946
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitCrohn__s disease
Initial sample5,956 European ancestry cases, 14,927 European ancestry controls
Replication sample14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region2q22.3
Chromosome idchr2
Chromosome position144734815
Reported geneintergenic
Mapped geneTEX41
Upstream gene id
Downstream gene id
SNP gene ids401014
Upstream gene distance
Downstream gene distance
SNP risk allelers11681525-C
SNPsrs11681525
Merged
SNP id current11681525
Contextintron_variant
Intergenic0
Allele frequency0.91
P value0.00000000004
Pvalue mlog10.397940008672
P value text(EA)
Or beta1.1577194
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST003044
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region2q22.3
Chromosome idchr2
Chromosome position144734815
Reported geneNR
Mapped geneTEX41
Upstream gene id
Downstream gene id
SNP gene ids401014
Upstream gene distance
Downstream gene distance
SNP risk allelers11681525-G
SNPsrs11681525
Merged
SNP id current11681525
Contextintron_variant
Intergenic0
Allele frequency0.91
P value0.000000002
Pvalue mlog8.69897000433601
P value text(EA)
Or beta1.1134332
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043