SNP Detail For rs11679592
1.Mapping Information
Human SNP ID rs11679592
Human chromosome chr2
Human SNP position 2402716
Pig chromosome chr3
Pig SNP position 141120121
2.Annotation Information
PubMed ID25082827
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25082827
StudyA genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.
Disease/TraitUlcerative colitis
Initial sampleup to 7,483 European ancestry cases, up to 21,211 European ancestry controls
Replication sample1,073 European ancestry cases, 1,279 European ancestry controls
Region2p25.3
Chromosome idchr2
Chromosome position2402716
Reported geneMYTL
Mapped geneMYT1L - LOC105373389
Upstream gene id23040
Downstream gene id105373389
SNP gene ids
Upstream gene distance71341
Downstream gene distance81692
SNP risk allelers11679592-C
SNPsrs11679592
Merged0
SNP id current11679592
Contextintergenic_variant
Intergenic1
Allele frequency0.48
P value0.000009
Pvalue mlog5.04575749056067
P value text(Southern European)
Or beta1.16
%95 Ci[1.03-1.31]
PlatformIllumina [546271]
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST002548