SNP Detail For rs11678036
1.Mapping Information
Human SNP ID rs11678036
Human chromosome chr2
Human SNP position 185160008
Pig chromosome chr15
Pig SNP position 100062905
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region2q32.1
Chromosome idchr2
Chromosome position185160008
Reported geneNR
Mapped geneLOC105373782
Upstream gene id
Downstream gene id
SNP gene ids105373782
Upstream gene distance
Downstream gene distance
SNP risk allelers11678036-C
SNPsrs11678036
Merged0
SNP id current11678036
Contextintergenic_variant
Intergenic0
Allele frequency0.390262875779163
P value0.000006
Pvalue mlog5.22184874961635
P value text(IGP26)
Or beta0.1459
%95 Ci[0.082-0.209] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848