SNP Detail For rs116755262
1.Mapping Information
Human SNP ID rs116755262
Human chromosome chr6
Human SNP position 44487396
Pig chromosome chr7
Pig SNP position 45390333
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitPR interval in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region6p21.1
Chromosome idchr6
Chromosome position44487396
Reported geneNR
Mapped geneCDC5L - LOC105375074
Upstream gene id988
Downstream gene id105375074
SNP gene ids
Upstream gene distance36972
Downstream gene distance22827
SNP risk allelers116755262-?
SNPsrs116755262
Merged0
SNP id current116755262
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000008
Pvalue mlog6.09691001300805
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitPR interval, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002279