SNP Detail For rs11673509
1.Mapping Information
Human SNP ID rs11673509
Human chromosome chr19
Human SNP position 5080636
Pig chromosome chr2
Pig SNP position 74485732
2.Annotation Information
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (CDC/AAP)
Initial sampleup to 3,915 European ancestry individuals
Replication sampleNA
Region19p13.3
Chromosome idchr19
Chromosome position5080636
Reported geneKDM4B
Mapped geneKDM4B
Upstream gene id
Downstream gene id
SNP gene ids23030
Upstream gene distance
Downstream gene distance
SNP risk allelers11673509-T
SNPsrs11673509
Merged0
SNP id current11673509
Contextintron_variant
Intergenic0
Allele frequency0.08
P value0.000006
Pvalue mlog5.22184874961635
P value text(Age 20-60 years)
Or beta1.66
%95 Ci[1.34-2.07]
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002126