SNP Detail For rs11668609
1.Mapping Information
Human SNP ID rs11668609
Human chromosome chr19
Human SNP position 24172691
Pig chromosome chr7
Pig SNP position 4532469
2.Annotation Information
PubMed ID23006423
JournalBMC Cancer
Linkwww.ncbi.nlm.nih.gov/pubmed/23006423
StudyGenetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.
Disease/TraitResponse to taxane treatment (docetaxel)
Initial sample96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines
Replication sampleNA
Region19p12
Chromosome idchr19
Chromosome position24172691
Reported geneZNF254
Mapped geneHAVCR1P1 - LOC105376906
Upstream gene id100101266
Downstream gene id105376906
SNP gene ids
Upstream gene distance9244
Downstream gene distance3347413
SNP risk allelers11668609-?
SNPsrs11668609
Merged0
SNP id current11668609
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 1300000]
CNVN
Mapped traitresponse to antineoplastic agent
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST001692