SNP Detail For rs116647499
1.Mapping Information
Human SNP ID rs116647499
Human chromosome chr1
Human SNP position 245919582
Pig chromosome chr10
Pig SNP position 20978861
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region1q44
Chromosome idchr1
Chromosome position245919582
Reported geneSMYD3
Mapped geneLOC105373269, SMYD3
Upstream gene id
Downstream gene id
SNP gene ids105373269, 64754
Upstream gene distance
Downstream gene distance
SNP risk allelers116647499-A
SNPsrs116647499
Merged0
SNP id current116647499
Contextintron_variant
Intergenic0
Allele frequency0.973
P value0.000004
Pvalue mlog5.39794000867203
P value text(AA)
Or beta0.274
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitforced expiratory volume, response to bronchodilator
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366
Study accessionGCST003262