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SNP Detail For rs11654749
1.Mapping Information
| Human SNP ID | rs11654749 |
|---|---|
| Human chromosome | chr17 |
| Human SNP position | 71129465 |
| Pig chromosome | chr12 |
| Pig SNP position | 9794883 |
2.Annotation Information
| PubMed ID | 23284291 |
|---|---|
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23284291 |
| Study | Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. |
| Disease/Trait | Pulmonary function (interaction) |
| Initial sample | 50,047 European ancestry individuals |
| Replication sample | NA |
| Region | 17q24.3 |
| Chromosome id | chr17 |
| Chromosome position | 71129465 |
| Reported gene | SOX9, KCNJ2 |
| Mapped gene | CASC17 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 101928165 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs11654749-T |
| SNPs | rs11654749 |
| Merged | 0 |
| SNP id current | 11654749 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.39 |
| P value | 0.00000001 |
| Pvalue mlog | 8 |
| P value text | (FEV1, Ever-smoking) |
| Or beta | 0.017 |
| %95 Ci | [-0.00848-0.04248] unit decrease |
| Platform | NR [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | forced expiratory volume |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004314 |
| Study accession | GCST001784 |
| PubMed ID | 23284291 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23284291 |
| Study | Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. |
| Disease/Trait | Pulmonary function (interaction) |
| Initial sample | 50,047 European ancestry individuals |
| Replication sample | NA |
| Region | 17q24.3 |
| Chromosome id | chr17 |
| Chromosome position | 71129465 |
| Reported gene | SOX9, KCNJ2 |
| Mapped gene | CASC17 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 101928165 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs11654749-T |
| SNPs | rs11654749 |
| Merged | 0 |
| SNP id current | 11654749 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.39 |
| P value | 0.00000007 |
| Pvalue mlog | 7.15490195998574 |
| P value text | (FEV1, Pack-years) |
| Or beta | 0 |
| %95 Ci | [-0.00008-0.00018] unit increase |
| Platform | NR [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | forced expiratory volume |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004314 |
| Study accession | GCST001784 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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