SNP Detail For rs11653545
1.Mapping Information
Human SNP ID rs11653545
Human chromosome chr17
Human SNP position 7608756
Pig chromosome chr12
Pig SNP position 55276663
2.Annotation Information
PubMed ID23118916
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23118916
StudyGenome-wide scan identifies variant in TNFSF13 associated with serum IgM in a healthy Chinese male population.
Disease/TraitIgM levels
Initial sample1,999 Han Chinese ancestry individuals
Replication sample1,496 East Asian ancestry individuals
Region17p13.1
Chromosome idchr17
Chromosome position7608756
Reported geneFXR2
Mapped geneFXR2
Upstream gene id
Downstream gene id
SNP gene ids9513
Upstream gene distance
Downstream gene distance
SNP risk allelers11653545-G
SNPsrs11653545
Merged0
SNP id current11653545
Contextintron_variant
Intergenic0
Allele frequency0.83
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta
%95 Ci
PlatformIllumina [1940243] (imputed)
CNVN
Mapped traitserum IgM measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004993
Study accessionGCST001724