Human SNP ID | rs11653545 |
---|---|
Human chromosome | chr17 |
Human SNP position | 7608756 |
Pig chromosome | chr12 |
Pig SNP position | 55276663 |
PubMed ID | 23118916 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23118916 |
Study | Genome-wide scan identifies variant in TNFSF13 associated with serum IgM in a healthy Chinese male population. |
Disease/Trait | IgM levels |
Initial sample | 1,999 Han Chinese ancestry individuals |
Replication sample | 1,496 East Asian ancestry individuals |
Region | 17p13.1 |
Chromosome id | chr17 |
Chromosome position | 7608756 |
Reported gene | FXR2 |
Mapped gene | FXR2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9513 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11653545-G |
SNPs | rs11653545 |
Merged | 0 |
SNP id current | 11653545 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.83 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [1940243] (imputed) |
CNV | N |
Mapped trait | serum IgM measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004993 |
Study accession | GCST001724 |