Human SNP ID | rs11653144 |
---|---|
Human chromosome | chr17 |
Human SNP position | 29348208 |
Pig chromosome | chr12 |
Pig SNP position | 47504507 |
PubMed ID | 22423221 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22423221 |
Study | A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans. |
Disease/Trait | Mean platelet volume |
Initial sample | 16,388 African American individuals |
Replication sample | NA |
Region | 17q11.2 |
Chromosome id | chr17 |
Chromosome position | 29348208 |
Reported gene | TAOK1 |
Mapped gene | RPL35AP35 - LOC105371931 |
Upstream gene id | 100271636 |
Downstream gene id | 105371931 |
SNP gene ids | |
Upstream gene distance | 7338 |
Downstream gene distance | 20649 |
SNP risk allele | rs11653144-T |
SNPs | rs11653144 |
Merged | 0 |
SNP id current | 11653144 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.442 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | (Mean Platelet Volume) |
Or beta | 0.13 |
%95 Ci | [0.091-0.169] fL decrease |
Platform | Affymetrix, Illumina [~ 2200000] (imputed) |
CNV | N |
Mapped trait | mean platelet volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004584 |
Study accession | GCST001439 |