SNP Detail For rs11653144
1.Mapping Information
Human SNP ID rs11653144
Human chromosome chr17
Human SNP position 29348208
Pig chromosome chr12
Pig SNP position 47504507
2.Annotation Information
PubMed ID22423221
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22423221
StudyA meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.
Disease/TraitMean platelet volume
Initial sample16,388 African American individuals
Replication sampleNA
Region17q11.2
Chromosome idchr17
Chromosome position29348208
Reported geneTAOK1
Mapped geneRPL35AP35 - LOC105371931
Upstream gene id100271636
Downstream gene id105371931
SNP gene ids
Upstream gene distance7338
Downstream gene distance20649
SNP risk allelers11653144-T
SNPsrs11653144
Merged0
SNP id current11653144
Contextupstream_gene_variant
Intergenic1
Allele frequency0.442
P value0.00000004
Pvalue mlog7.39794000867203
P value text(Mean Platelet Volume)
Or beta0.13
%95 Ci[0.091-0.169] fL decrease
PlatformAffymetrix, Illumina [~ 2200000] (imputed)
CNVN
Mapped traitmean platelet volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004584
Study accessionGCST001439