SNP Detail For rs11650494
1.Mapping Information
Human SNP ID rs11650494
Human chromosome chr17
Human SNP position 49267824
Pig chromosome chr12
Pig SNP position 25420982
2.Annotation Information
PubMed ID23535732
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535732
StudyIdentification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
Disease/TraitProstate cancer
Initial sample11,085 European ancestry cases, 11,463 European ancestry controls
Replication sample19,662 European ancestry cases, 19,715 European ancestry controls
Region17q21.32
Chromosome idchr17
Chromosome position49267824
Reported geneNGFR, PHB, PHOSPHO1, HOXB13, PRAC, SPOP, ZNF652, ABI3, B4GALNT2, FLJ40194, GNGT2, IGF2BP1
Mapped geneFLJ40194 - MIR6129
Upstream gene id124871
Downstream gene id102465137
SNP gene ids
Upstream gene distance9159
Downstream gene distance20522
SNP risk allelers11650494-A
SNPsrs11650494
Merged0
SNP id current11650494
Contextintergenic_variant
Intergenic1
Allele frequency0.08
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.15
%95 Ci[1.09-1.22]
PlatformIllumina [~ 2600000] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001942