Human SNP ID | rs11650494 |
---|---|
Human chromosome | chr17 |
Human SNP position | 49267824 |
Pig chromosome | chr12 |
Pig SNP position | 25420982 |
PubMed ID | 23535732 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535732 |
Study | Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. |
Disease/Trait | Prostate cancer |
Initial sample | 11,085 European ancestry cases, 11,463 European ancestry controls |
Replication sample | 19,662 European ancestry cases, 19,715 European ancestry controls |
Region | 17q21.32 |
Chromosome id | chr17 |
Chromosome position | 49267824 |
Reported gene | NGFR, PHB, PHOSPHO1, HOXB13, PRAC, SPOP, ZNF652, ABI3, B4GALNT2, FLJ40194, GNGT2, IGF2BP1 |
Mapped gene | FLJ40194 - MIR6129 |
Upstream gene id | 124871 |
Downstream gene id | 102465137 |
SNP gene ids | |
Upstream gene distance | 9159 |
Downstream gene distance | 20522 |
SNP risk allele | rs11650494-A |
SNPs | rs11650494 |
Merged | 0 |
SNP id current | 11650494 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.08 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.09-1.22] |
Platform | Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001942 |