SNP Detail For rs116446171
1.Mapping Information
Human SNP ID rs116446171
Human chromosome chr6
Human SNP position 484453
Pig chromosome chr7
Pig SNP position 47662
2.Annotation Information
PubMed ID25261932
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25261932
StudyGenome-wide association study identifies multiple susceptibility loci for diffuse large B cell lymphoma.
Disease/TraitDiffuse large B cell lymphoma
Initial sample3,857 European ancestry cases, 7,666 European ancestry controls
Replication sample1,359 European ancestry cases, 4,557 European ancestry controls
Region6p25.3
Chromosome idchr6
Chromosome position484453
Reported geneEXOC2
Mapped geneLOC105374875
Upstream gene id
Downstream gene id
SNP gene ids105374875
Upstream gene distance
Downstream gene distance
SNP risk allelers116446171-G
SNPsrs116446171
Merged0
SNP id current116446171
Contextdownstream_gene_variant
Intergenic0
Allele frequency0.019
P value2E-21
Pvalue mlog20.698970004336
P value text
Or beta2.2
%95 Ci[1.87-2.59]
PlatformIllumina [8363971] (imputed)
CNVN
Mapped traitdiffuse large B-cell lymphoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000403
Study accessionGCST002636