SNP Detail For rs11626056
1.Mapping Information
Human SNP ID rs11626056
Human chromosome chr14
Human SNP position 51766558
Pig chromosome chr2
Pig SNP position 67968030
2.Annotation Information
PubMed ID19668339
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/19668339
StudyHippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer__s disease.
Disease/TraitHippocampal atrophy
Initial sample162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases
Replication sampleNA
Region14q22.1
Chromosome idchr14
Chromosome position51766558
Reported geneFRMD6
Mapped geneLOC101927598
Upstream gene id
Downstream gene id
SNP gene ids101927598
Upstream gene distance
Downstream gene distance
SNP risk allelers11626056-?
SNPsrs11626056
Merged0
SNP id current11626056
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta
%95 Ci
PlatformIllumina [516645]
CNVN
Mapped traithippocampal atrophy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005039
Study accessionGCST000461