Human SNP ID | rs11626056 |
---|---|
Human chromosome | chr14 |
Human SNP position | 51766558 |
Pig chromosome | chr2 |
Pig SNP position | 67968030 |
PubMed ID | 19668339 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/19668339 |
Study | Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer__s disease. |
Disease/Trait | Hippocampal atrophy |
Initial sample | 162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases |
Replication sample | NA |
Region | 14q22.1 |
Chromosome id | chr14 |
Chromosome position | 51766558 |
Reported gene | FRMD6 |
Mapped gene | LOC101927598 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101927598 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11626056-? |
SNPs | rs11626056 |
Merged | 0 |
SNP id current | 11626056 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [516645] |
CNV | N |
Mapped trait | hippocampal atrophy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005039 |
Study accession | GCST000461 |