SNP Detail For rs11622475
1.Mapping Information
Human SNP ID rs11622475
Human chromosome chr14
Human SNP position 104042739
Pig chromosome chr7
Pig SNP position 131119626
2.Annotation Information
PubMed ID17554300
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/17554300
StudyGenome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.
Disease/TraitBipolar disorder
Initial sample1,868 European ancestry cases, 2,938 European ancestry controls
Replication sampleNA
Region14q32.33
Chromosome idchr14
Chromosome position104042739
Reported geneNR
Mapped geneTDRD9
Upstream gene id
Downstream gene id
SNP gene ids122402
Upstream gene distance
Downstream gene distance
SNP risk allelers11622475-C
SNPsrs11622475
Merged0
SNP id current11622475
Contextintron_variant
Intergenic0
Allele frequency0.7
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta1.13
%95 Ci[0.89-1.44]
PlatformAffymetrix [469557]
CNVN
Mapped traitbipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST000044
PubMed ID21254220
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/21254220
StudyPropensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.
Disease/TraitBipolar disorder
Initial sample1,868 European ancestry cases, 2,938 European ancestry controls
Replication sampleNA
Region14q32.33
Chromosome idchr14
Chromosome position104042739
Reported geneNR
Mapped geneTDRD9
Upstream gene id
Downstream gene id
SNP gene ids122402
Upstream gene distance
Downstream gene distance
SNP risk allelers11622475-?
SNPsrs11622475
Merged0
SNP id current11622475
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(addtive)
Or beta
%95 Ci
PlatformAffymetrix [NR]
CNVN
Mapped traitbipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST000961