SNP Detail For rs11622412
1.Mapping Information
Human SNP ID rs11622412
Human chromosome chr14
Human SNP position 38214056
Pig chromosome chr7
Pig SNP position 66592724
2.Annotation Information
PubMed ID23319000
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23319000
StudyGenome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
Disease/TraitMetabolite levels (5-HIAA/ MHPG Ratio)
Initial sampleup to 398 European ancestry individuals
Replication sampleNA
Region14q21.1
Chromosome idchr14
Chromosome position38214056
Reported geneSSTR1, CLEC14A
Mapped geneSSTR1 - CLEC14A
Upstream gene id6751
Downstream gene id161198
SNP gene ids
Upstream gene distance993
Downstream gene distance39944
SNP risk allelers11622412-T
SNPsrs11622412
Merged0
SNP id current11622412
Contextdownstream_gene_variant
Intergenic1
Allele frequency
P value0.00000005
Pvalue mlog7.30102999566398
P value text
Or beta0.323
%95 Ciunit increase
PlatformIllumina [5767231] (imputed)
CNVN
Mapped traitMHPG measurement, 5-HIAA measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005133, http://www.ebi.ac.uk/efo/EFO_0005132
Study accessionGCST001821