Human SNP ID | rs11622412 |
---|---|
Human chromosome | chr14 |
Human SNP position | 38214056 |
Pig chromosome | chr7 |
Pig SNP position | 66592724 |
PubMed ID | 23319000 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23319000 |
Study | Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. |
Disease/Trait | Metabolite levels (5-HIAA/ MHPG Ratio) |
Initial sample | up to 398 European ancestry individuals |
Replication sample | NA |
Region | 14q21.1 |
Chromosome id | chr14 |
Chromosome position | 38214056 |
Reported gene | SSTR1, CLEC14A |
Mapped gene | SSTR1 - CLEC14A |
Upstream gene id | 6751 |
Downstream gene id | 161198 |
SNP gene ids | |
Upstream gene distance | 993 |
Downstream gene distance | 39944 |
SNP risk allele | rs11622412-T |
SNPs | rs11622412 |
Merged | 0 |
SNP id current | 11622412 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.00000005 |
Pvalue mlog | 7.30102999566398 |
P value text | |
Or beta | 0.323 |
%95 Ci | unit increase |
Platform | Illumina [5767231] (imputed) |
CNV | N |
Mapped trait | MHPG measurement, 5-HIAA measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005133, http://www.ebi.ac.uk/efo/EFO_0005132 |
Study accession | GCST001821 |