SNP Detail For rs116126197
1.Mapping Information
Human SNP ID rs116126197
Human chromosome chr3
Human SNP position 13439534
Pig chromosome chr13
Pig SNP position 78599495
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region3p25.1
Chromosome idchr3
Chromosome position13439534
Reported geneIntergenic
Mapped geneNUP210 - LOC100128772
Upstream gene id23225
Downstream gene id100128772
SNP gene ids
Upstream gene distance19215
Downstream gene distance20757
SNP risk allelers116126197-A
SNPsrs116126197
Merged0
SNP id current116126197
Contextintergenic_variant
Intergenic1
Allele frequency0.997
P value0.000004
Pvalue mlog5.39794000867203
P value text(AA)
Or beta0.246
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264