Human SNP ID | rs116065238 |
---|---|
Human chromosome | chr1 |
Human SNP position | 171482283 |
Pig chromosome | chr9 |
Pig SNP position | 125428789 |
PubMed ID | 26252872 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 1q24.3 |
Chromosome id | chr1 |
Chromosome position | 171482283 |
Reported gene | FMO4, PRRC2C |
Mapped gene | FMO4 - PRRC2C |
Upstream gene id | 2329 |
Downstream gene id | 23215 |
SNP gene ids | |
Upstream gene distance | 140199 |
Downstream gene distance | 3230 |
SNP risk allele | rs116065238-A |
SNPs | rs116065238 |
Merged | |
SNP id current | 116065238 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.0027 |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | (EA) |
Or beta | 0.6235 |
%95 Ci | [0.44-0.81] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |
PubMed ID | 26252872 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 1q24.3 |
Chromosome id | chr1 |
Chromosome position | 171482283 |
Reported gene | FMO4, PRRC2C |
Mapped gene | FMO4 - PRRC2C |
Upstream gene id | 2329 |
Downstream gene id | 23215 |
SNP gene ids | |
Upstream gene distance | 140199 |
Downstream gene distance | 3230 |
SNP risk allele | rs116065238-A |
SNPs | rs116065238 |
Merged | |
SNP id current | 116065238 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.0027 |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | |
Or beta | 0.6201 |
%95 Ci | [0.43-0.81] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |