SNP Detail For rs116065238
1.Mapping Information
Human SNP ID rs116065238
Human chromosome chr1
Human SNP position 171482283
Pig chromosome chr9
Pig SNP position 125428789
2.Annotation Information
PubMed ID26252872
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26252872
StudyVariations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level.
Disease/TraitCognitive decline rate in late mild cognitive impairment
Initial sample472 European ancestry cases, 47 cases
Replication sampleNA
Region1q24.3
Chromosome idchr1
Chromosome position171482283
Reported geneFMO4, PRRC2C
Mapped geneFMO4 - PRRC2C
Upstream gene id2329
Downstream gene id23215
SNP gene ids
Upstream gene distance140199
Downstream gene distance3230
SNP risk allelers116065238-A
SNPsrs116065238
Merged
SNP id current116065238
Contextupstream_gene_variant
Intergenic1
Allele frequency0.0027
P value0.0000000002
Pvalue mlog9.69897000433601
P value text(EA)
Or beta0.6235
%95 Ci[0.44-0.81] unit increase
PlatformIllumina [~ 9000000] (imputed)
CNVN
Mapped traitcognitive impairment, cognitive decline measurement
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710
Study accessionGCST003075
PubMed ID26252872
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26252872
StudyVariations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level.
Disease/TraitCognitive decline rate in late mild cognitive impairment
Initial sample472 European ancestry cases, 47 cases
Replication sampleNA
Region1q24.3
Chromosome idchr1
Chromosome position171482283
Reported geneFMO4, PRRC2C
Mapped geneFMO4 - PRRC2C
Upstream gene id2329
Downstream gene id23215
SNP gene ids
Upstream gene distance140199
Downstream gene distance3230
SNP risk allelers116065238-A
SNPsrs116065238
Merged
SNP id current116065238
Contextupstream_gene_variant
Intergenic1
Allele frequency0.0027
P value0.0000000002
Pvalue mlog9.69897000433601
P value text
Or beta0.6201
%95 Ci[0.43-0.81] unit increase
PlatformIllumina [~ 9000000] (imputed)
CNVN
Mapped traitcognitive impairment, cognitive decline measurement
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710
Study accessionGCST003075