SNP Detail For rs11605924
1.Mapping Information
Human SNP ID rs11605924
Human chromosome chr11
Human SNP position 45851540
Pig chromosome chr2
Pig SNP position 17897163
2.Annotation Information
PubMed ID20081858
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20081858
StudyNew genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.
Disease/TraitFasting glucose-related traits
Initial sampleup to 46,186 European ancestry individuals
Replication sampleup to 76,558 European ancestry individuals
Region11p11.2
Chromosome idchr11
Chromosome position45851540
Reported geneCRY2
Mapped geneCRY2
Upstream gene id
Downstream gene id
SNP gene ids1408
Upstream gene distance
Downstream gene distance
SNP risk allelers11605924-A
SNPsrs11605924
Merged0
SNP id current11605924
Contextintron_variant
Intergenic0
Allele frequency0.49
P value0.00000000000001
Pvalue mlog14
P value text(FPG)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitfasting blood glucose measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004465
Study accessionGCST000568
PubMed ID22581228
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22581228
StudyA genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.
Disease/TraitFasting glucose-related traits (interaction with BMI)
Initial sampleUp to 58,074 European ancestry individuals
Replication sampleUp tp 38,422 European ancestry individuals
Region11p11.2
Chromosome idchr11
Chromosome position45851540
Reported geneCRY2
Mapped geneCRY2
Upstream gene id
Downstream gene id
SNP gene ids1408
Upstream gene distance
Downstream gene distance
SNP risk allelers11605924-?
SNPsrs11605924
Merged0
SNP id current11605924
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000000000004
Pvalue mlog14.397940008672
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 2400000] (imputed)
CNVN
Mapped traitbody mass index, fasting blood glucose measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340, http://www.ebi.ac.uk/efo/EFO_0004465
Study accessionGCST001527