SNP Detail For rs115955109
1.Mapping Information
Human SNP ID rs115955109
Human chromosome chr5
Human SNP position 43774010
Pig chromosome chr16
Pig SNP position 29793321
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region5p12
Chromosome idchr5
Chromosome position43774010
Reported geneIntergenic
Mapped geneNNT - RNU6-381P
Upstream gene id23530
Downstream gene id106480576
SNP gene ids
Upstream gene distance68444
Downstream gene distance292614
SNP risk allelers115955109-A
SNPsrs115955109
Merged0
SNP id current115955109
Contextintergenic_variant
Intergenic1
Allele frequency0.966
P value0.000001
Pvalue mlog6
P value text(AA)
Or beta0.08
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003265