Human SNP ID | rs11587400 |
---|---|
Human chromosome | chr1 |
Human SNP position | 114537037 |
Pig chromosome | chr7 |
Pig SNP position | 65568559 |
PubMed ID | 24189344 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/24189344 |
Study | Common genetic variants on 1p13.2 associate with risk of autism. |
Disease/Trait | Autism |
Initial sample | 275 Chinese ancestry cases and 550 Chinese ancestry controls from 275 trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls |
Replication sample | 1,299 European ancestry cases and 2,598 European ancestry controls from 1,299 trios |
Region | 1p13.2 |
Chromosome id | chr1;1 |
Chromosome position | 114556471;114537037 |
Reported gene | TRIM33, BCAS2 |
Mapped gene | LOC105378913 - BCAS2; PKMP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1877455-T; rs11587400-C |
SNPs | rs1877455; rs11587400 |
Merged | 0 |
SNP id current | |
Context | intergenic_variant; non_coding_transcript_exon_variant |
Intergenic | |
Allele frequency | 0.449 |
P value | 0.00000007 |
Pvalue mlog | 7.15490195998574 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [702234] (imputed) |
CNV | N |
Mapped trait | autism |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003758 |
Study accession | GCST002268 |
PubMed ID | 24189344 |
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/24189344 |
Study | Common genetic variants on 1p13.2 associate with risk of autism. |
Disease/Trait | Autism |
Initial sample | 275 Chinese ancestry cases and 550 Chinese ancestry controls from 275 trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls |
Replication sample | 1,299 European ancestry cases and 2,598 European ancestry controls from 1,299 trios |
Region | 1p13.2 |
Chromosome id | chr1;1;1 |
Chromosome position | 114531255;114556471;114537037 |
Reported gene | BCAS2, TRIM33 |
Mapped gene | TRIM33 - PKMP1; LOC105378913 - BCAS2; PKMP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10858047-T; rs1877455-T; rs11587400-C |
SNPs | rs10858047; rs1877455; rs11587400 |
Merged | 0 |
SNP id current | |
Context | upstream_gene_variant; intergenic_variant; non_coding_transcript_exon_variant |
Intergenic | |
Allele frequency | 0.444 |
P value | 0.00000008 |
Pvalue mlog | 7.09691001300805 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [702234] (imputed) |
CNV | N |
Mapped trait | autism |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003758 |
Study accession | GCST002268 |