SNP Detail For rs11585926
1.Mapping Information
Human SNP ID rs11585926
Human chromosome chr1
Human SNP position 114431068
Pig chromosome chr4
Pig SNP position 116341007
2.Annotation Information
PubMed ID24189344
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/24189344
StudyCommon genetic variants on 1p13.2 associate with risk of autism.
Disease/TraitAutism
Initial sample275 Chinese ancestry cases and 550 Chinese ancestry controls from 275 trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls
Replication sample1,299 European ancestry cases and 2,598 European ancestry controls from 1,299 trios
Region1p13.2
Chromosome idchr1;1;1;1;1;1
Chromosome position114416918;114456655;114405659;114431068;114496497;114453702
Reported geneTRIM33
Mapped geneTRIM33; TRIM33; LOC101928890; TRIM33; TRIM33; TRIM33; TRIM33
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers11582563-G; rs7511633-G; rs6537825-A; rs11585926-T; rs6661053-T; rs11589568-T
SNPsrs11582563; rs7511633; rs6537825; rs11585926; rs6661053; rs11589568
Merged0
SNP id current
Contextintron_variant; intron_variant; missense_variant; intron_variant; intron_variant; intron_variant
Intergenic
Allele frequency0.382
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta
%95 Ci
PlatformIllumina [702234] (imputed)
CNVN
Mapped traitautism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003758
Study accessionGCST002268
PubMed ID24189344
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/24189344
StudyCommon genetic variants on 1p13.2 associate with risk of autism.
Disease/TraitAutism
Initial sample275 Chinese ancestry cases and 550 Chinese ancestry controls from 275 trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls
Replication sample1,299 European ancestry cases and 2,598 European ancestry controls from 1,299 trios
Region1p13.2
Chromosome idchr1;1;1;1;1;1;1
Chromosome position114416918;114456655;114498310;114405659;114431068;114496497;114453702
Reported geneTRIM33
Mapped geneTRIM33; TRIM33; TRIM33; LOC101928890; TRIM33; TRIM33; TRIM33; TRIM33
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers11582563-G; rs7511633-G; rs11102800-C; rs6537825-A; rs11585926-T; rs6661053-T; rs11589568-T
SNPsrs11582563; rs7511633; rs11102800; rs6537825; rs11585926; rs6661053; rs11589568
Merged0
SNP id current
Contextintron_variant; intron_variant; intron_variant; missense_variant; intron_variant; intron_variant; intron_variant
Intergenic
Allele frequency0.382
P value0.00000006
Pvalue mlog7.22184874961635
P value text
Or beta
%95 Ci
PlatformIllumina [702234] (imputed)
CNVN
Mapped traitautism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003758
Study accessionGCST002268
PubMed ID24189344
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/24189344
StudyCommon genetic variants on 1p13.2 associate with risk of autism.
Disease/TraitAutism
Initial sample275 Chinese ancestry cases and 550 Chinese ancestry controls from 275 trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls
Replication sample1,299 European ancestry cases and 2,598 European ancestry controls from 1,299 trios
Region1p13.2
Chromosome idchr1;1;1;1;1;1;1;1
Chromosome position114510087;114416918;114456655;114498310;114405659;114431068;114496497;114453702
Reported geneTRIM33
Mapped geneTRIM33; TRIM33; TRIM33; TRIM33; LOC101928890; TRIM33; TRIM33; TRIM33; TRIM33
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers3827735-C; rs11582563-G; rs7511633-G; rs11102800-C; rs6537825-A; rs11585926-T; rs6661053-T; rs11589568-T
SNPsrs3827735; rs11582563; rs7511633; rs11102800; rs6537825; rs11585926; rs6661053; rs11589568
Merged0
SNP id current
Contextintron_variant; intron_variant; intron_variant; intron_variant; missense_variant; intron_variant; intron_variant; intron_variant
Intergenic
Allele frequency0.382
P value0.00000006
Pvalue mlog7.22184874961635
P value text
Or beta
%95 Ci
PlatformIllumina [702234] (imputed)
CNVN
Mapped traitautism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003758
Study accessionGCST002268
PubMed ID24189344
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/24189344
StudyCommon genetic variants on 1p13.2 associate with risk of autism.
Disease/TraitAutism
Initial sample275 Chinese ancestry cases and 550 Chinese ancestry controls from 275 trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls
Replication sample1,299 European ancestry cases and 2,598 European ancestry controls from 1,299 trios
Region1p13.2
Chromosome idchr1;1;1;1;1;1;1;1;1
Chromosome position114510087;114416918;114518963;114456655;114498310;114405659;114431068;114496497;114453702
Reported geneTRIM33
Mapped geneTRIM33; TRIM33; TRIM33 - PKMP1; TRIM33; TRIM33; LOC101928890; TRIM33; TRIM33; TRIM33; TRIM33
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers3827735-C; rs11582563-G; rs11102807-A; rs7511633-G; rs11102800-C; rs6537825-A; rs11585926-T; rs6661053-T; rs11589568-T
SNPsrs3827735; rs11582563; rs11102807; rs7511633; rs11102800; rs6537825; rs11585926; rs6661053; rs11589568
Merged0
SNP id current
Contextintron_variant; intron_variant; intergenic_variant; intron_variant; intron_variant; missense_variant; intron_variant; intron_variant; intron_variant
Intergenic
Allele frequency0.382
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta
%95 Ci
PlatformIllumina [702234] (imputed)
CNVN
Mapped traitautism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003758
Study accessionGCST002268