Human SNP ID | rs11585926 |
---|---|
Human chromosome | chr1 |
Human SNP position | 114431068 |
Pig chromosome | chr4 |
Pig SNP position | 116341007 |
PubMed ID | 24189344 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/24189344 |
Study | Common genetic variants on 1p13.2 associate with risk of autism. |
Disease/Trait | Autism |
Initial sample | 275 Chinese ancestry cases and 550 Chinese ancestry controls from 275 trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls |
Replication sample | 1,299 European ancestry cases and 2,598 European ancestry controls from 1,299 trios |
Region | 1p13.2 |
Chromosome id | chr1;1;1;1;1;1 |
Chromosome position | 114416918;114456655;114405659;114431068;114496497;114453702 |
Reported gene | TRIM33 |
Mapped gene | TRIM33; TRIM33; LOC101928890; TRIM33; TRIM33; TRIM33; TRIM33 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11582563-G; rs7511633-G; rs6537825-A; rs11585926-T; rs6661053-T; rs11589568-T |
SNPs | rs11582563; rs7511633; rs6537825; rs11585926; rs6661053; rs11589568 |
Merged | 0 |
SNP id current | |
Context | intron_variant; intron_variant; missense_variant; intron_variant; intron_variant; intron_variant |
Intergenic | |
Allele frequency | 0.382 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [702234] (imputed) |
CNV | N |
Mapped trait | autism |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003758 |
Study accession | GCST002268 |
PubMed ID | 24189344 |
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/24189344 |
Study | Common genetic variants on 1p13.2 associate with risk of autism. |
Disease/Trait | Autism |
Initial sample | 275 Chinese ancestry cases and 550 Chinese ancestry controls from 275 trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls |
Replication sample | 1,299 European ancestry cases and 2,598 European ancestry controls from 1,299 trios |
Region | 1p13.2 |
Chromosome id | chr1;1;1;1;1;1;1 |
Chromosome position | 114416918;114456655;114498310;114405659;114431068;114496497;114453702 |
Reported gene | TRIM33 |
Mapped gene | TRIM33; TRIM33; TRIM33; LOC101928890; TRIM33; TRIM33; TRIM33; TRIM33 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11582563-G; rs7511633-G; rs11102800-C; rs6537825-A; rs11585926-T; rs6661053-T; rs11589568-T |
SNPs | rs11582563; rs7511633; rs11102800; rs6537825; rs11585926; rs6661053; rs11589568 |
Merged | 0 |
SNP id current | |
Context | intron_variant; intron_variant; intron_variant; missense_variant; intron_variant; intron_variant; intron_variant |
Intergenic | |
Allele frequency | 0.382 |
P value | 0.00000006 |
Pvalue mlog | 7.22184874961635 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [702234] (imputed) |
CNV | N |
Mapped trait | autism |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003758 |
Study accession | GCST002268 |
PubMed ID | 24189344 |
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/24189344 |
Study | Common genetic variants on 1p13.2 associate with risk of autism. |
Disease/Trait | Autism |
Initial sample | 275 Chinese ancestry cases and 550 Chinese ancestry controls from 275 trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls |
Replication sample | 1,299 European ancestry cases and 2,598 European ancestry controls from 1,299 trios |
Region | 1p13.2 |
Chromosome id | chr1;1;1;1;1;1;1;1 |
Chromosome position | 114510087;114416918;114456655;114498310;114405659;114431068;114496497;114453702 |
Reported gene | TRIM33 |
Mapped gene | TRIM33; TRIM33; TRIM33; TRIM33; LOC101928890; TRIM33; TRIM33; TRIM33; TRIM33 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3827735-C; rs11582563-G; rs7511633-G; rs11102800-C; rs6537825-A; rs11585926-T; rs6661053-T; rs11589568-T |
SNPs | rs3827735; rs11582563; rs7511633; rs11102800; rs6537825; rs11585926; rs6661053; rs11589568 |
Merged | 0 |
SNP id current | |
Context | intron_variant; intron_variant; intron_variant; intron_variant; missense_variant; intron_variant; intron_variant; intron_variant |
Intergenic | |
Allele frequency | 0.382 |
P value | 0.00000006 |
Pvalue mlog | 7.22184874961635 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [702234] (imputed) |
CNV | N |
Mapped trait | autism |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003758 |
Study accession | GCST002268 |
PubMed ID | 24189344 |
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/24189344 |
Study | Common genetic variants on 1p13.2 associate with risk of autism. |
Disease/Trait | Autism |
Initial sample | 275 Chinese ancestry cases and 550 Chinese ancestry controls from 275 trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls |
Replication sample | 1,299 European ancestry cases and 2,598 European ancestry controls from 1,299 trios |
Region | 1p13.2 |
Chromosome id | chr1;1;1;1;1;1;1;1;1 |
Chromosome position | 114510087;114416918;114518963;114456655;114498310;114405659;114431068;114496497;114453702 |
Reported gene | TRIM33 |
Mapped gene | TRIM33; TRIM33; TRIM33 - PKMP1; TRIM33; TRIM33; LOC101928890; TRIM33; TRIM33; TRIM33; TRIM33 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3827735-C; rs11582563-G; rs11102807-A; rs7511633-G; rs11102800-C; rs6537825-A; rs11585926-T; rs6661053-T; rs11589568-T |
SNPs | rs3827735; rs11582563; rs11102807; rs7511633; rs11102800; rs6537825; rs11585926; rs6661053; rs11589568 |
Merged | 0 |
SNP id current | |
Context | intron_variant; intron_variant; intergenic_variant; intron_variant; intron_variant; missense_variant; intron_variant; intron_variant; intron_variant |
Intergenic | |
Allele frequency | 0.382 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [702234] (imputed) |
CNV | N |
Mapped trait | autism |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003758 |
Study accession | GCST002268 |