SNP Detail For rs115842765
1.Mapping Information
Human SNP ID rs115842765
Human chromosome chr6
Human SNP position 43225580
Pig chromosome chr7
Pig SNP position 43764077
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitPR interval in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region6p21.1
Chromosome idchr6
Chromosome position43225580
Reported geneNR
Mapped geneCUL9 - DNPH1
Upstream gene id23113
Downstream gene id10591
SNP gene ids
Upstream gene distance993
Downstream gene distance49
SNP risk allelers115842765-?
SNPsrs115842765
Merged0
SNP id current115842765
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitPR interval, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002279