SNP Detail For rs1158058
1.Mapping Information
Human SNP ID rs1158058
Human chromosome chr6
Human SNP position 71016836
Pig chromosome chr1
Pig SNP position 57427237
2.Annotation Information
PubMed ID23319000
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23319000
StudyGenome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
Disease/TraitMetabolite levels (MHPG)
Initial sampleup to 398 European ancestry individuals
Replication sampleNA
Region6q13
Chromosome idchr6
Chromosome position71016836
Reported geneintergenic
Mapped geneB3GAT2 - LOC101928394
Upstream gene id135152
Downstream gene id101928394
SNP gene ids
Upstream gene distance59647
Downstream gene distance42744
SNP risk allelers1158058-T
SNPsrs1158058
Merged0
SNP id current1158058
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.2918
%95 Ciunit increase
PlatformIllumina [5767231] (imputed)
CNVN
Mapped traitMHPG measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005133
Study accessionGCST001822