Human SNP ID | rs1158058 |
---|---|
Human chromosome | chr6 |
Human SNP position | 71016836 |
Pig chromosome | chr1 |
Pig SNP position | 57427237 |
PubMed ID | 23319000 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23319000 |
Study | Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. |
Disease/Trait | Metabolite levels (MHPG) |
Initial sample | up to 398 European ancestry individuals |
Replication sample | NA |
Region | 6q13 |
Chromosome id | chr6 |
Chromosome position | 71016836 |
Reported gene | intergenic |
Mapped gene | B3GAT2 - LOC101928394 |
Upstream gene id | 135152 |
Downstream gene id | 101928394 |
SNP gene ids | |
Upstream gene distance | 59647 |
Downstream gene distance | 42744 |
SNP risk allele | rs1158058-T |
SNPs | rs1158058 |
Merged | 0 |
SNP id current | 1158058 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 0.2918 |
%95 Ci | unit increase |
Platform | Illumina [5767231] (imputed) |
CNV | N |
Mapped trait | MHPG measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005133 |
Study accession | GCST001822 |