SNP Detail For rs11577354
1.Mapping Information
Human SNP ID rs11577354
Human chromosome chr1
Human SNP position 235103812
Pig chromosome chr14
Pig SNP position 60245478
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region1q42.3
Chromosome idchr1
Chromosome position235103812
Reported geneTOMM20
Mapped geneLINC01348 - TOMM20
Upstream gene id731656
Downstream gene id9804
SNP gene ids
Upstream gene distance33994
Downstream gene distance5529
SNP risk allelers11577354-G
SNPsrs11577354
Merged0
SNP id current11577354
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.445
P value0.000007
Pvalue mlog5.15490195998574
P value text(RQmax)
Or beta0.04
%95 Ci[NR] increase
PlatformIllumina [899892]
CNVN
Mapped traitrespiratory quotient
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005189
Study accessionGCST001762