Human SNP ID | rs115764752 |
---|---|
Human chromosome | chr1 |
Human SNP position | 171778066 |
Pig chromosome | chr9 |
Pig SNP position | 125662553 |
PubMed ID | 26252872 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 1q24.3 |
Chromosome id | chr1 |
Chromosome position | 171778066 |
Reported gene | VAMP4, METTL13 |
Mapped gene | LOC105371614 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105371614 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs115764752-T |
SNPs | rs115764752 |
Merged | |
SNP id current | 115764752 |
Context | upstream_gene_variant |
Intergenic | 0 |
Allele frequency | 0.0046 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (EA) |
Or beta | 0.5455 |
%95 Ci | [0.33-0.76] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |
PubMed ID | 26252872 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 1q24.3 |
Chromosome id | chr1 |
Chromosome position | 171778066 |
Reported gene | VAMP4, METTL13 |
Mapped gene | LOC105371614 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105371614 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs115764752-T |
SNPs | rs115764752 |
Merged | |
SNP id current | 115764752 |
Context | upstream_gene_variant |
Intergenic | 0 |
Allele frequency | 0.0046 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | 0.5409 |
%95 Ci | [0.33-0.75] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |