SNP Detail For rs11572061
1.Mapping Information
Human SNP ID rs11572061
Human chromosome chr6
Human SNP position 44448340
Pig chromosome chr7
Pig SNP position 45351132
2.Annotation Information
PubMed ID26089329
JournalStroke
Linkwww.ncbi.nlm.nih.gov/pubmed/26089329
StudyMeta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.
Disease/TraitIschemic stroke
Initial sampleup to 1,365 African American cases, up to 13,154 African American controls
Replication sampleEuropean ancestry individuals (see Traylor, 2012)
Region6p21.1
Chromosome idchr6
Chromosome position44448340
Reported geneCDC5L
Mapped geneCDC5L
Upstream gene id
Downstream gene id
SNP gene ids988
Upstream gene distance
Downstream gene distance
SNP risk allelers11572061-A
SNPsrs11572061
Merged
SNP id current11572061
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.97
P value0.000001
Pvalue mlog6
P value text(AA)
Or beta0.59
%95 Ci[0.35-0.83] unit decrease
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitIschemic stroke
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0002140
Study accessionGCST002988