Human SNP ID | rs11568818 |
---|---|
Human chromosome | chr11 |
Human SNP position | 102530930 |
Pig chromosome | chr9 |
Pig SNP position | 37143647 |
PubMed ID | 23535732 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535732 |
Study | Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. |
Disease/Trait | Prostate cancer |
Initial sample | 11,085 European ancestry cases, 11,463 European ancestry controls |
Replication sample | 19,662 European ancestry cases, 19,715 European ancestry controls |
Region | 11q22.2 |
Chromosome id | chr11 |
Chromosome position | 102530930 |
Reported gene | MMP8, BIRC2, MMP10, MMP20, MMP27, MMP7, YAP1, BIRC3, TMEM123 |
Mapped gene | MMP7 - MMP20 |
Upstream gene id | 4316 |
Downstream gene id | 9313 |
SNP gene ids | |
Upstream gene distance | 183 |
Downstream gene distance | 45905 |
SNP risk allele | rs11568818-A |
SNPs | rs11568818 |
Merged | 0 |
SNP id current | 11568818 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.56 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | |
Or beta | 1.1 |
%95 Ci | [1.06-1.14] |
Platform | Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001942 |