SNP Detail For rs11568818
1.Mapping Information
Human SNP ID rs11568818
Human chromosome chr11
Human SNP position 102530930
Pig chromosome chr9
Pig SNP position 37143647
2.Annotation Information
PubMed ID23535732
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535732
StudyIdentification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
Disease/TraitProstate cancer
Initial sample11,085 European ancestry cases, 11,463 European ancestry controls
Replication sample19,662 European ancestry cases, 19,715 European ancestry controls
Region11q22.2
Chromosome idchr11
Chromosome position102530930
Reported geneMMP8, BIRC2, MMP10, MMP20, MMP27, MMP7, YAP1, BIRC3, TMEM123
Mapped geneMMP7 - MMP20
Upstream gene id4316
Downstream gene id9313
SNP gene ids
Upstream gene distance183
Downstream gene distance45905
SNP risk allelers11568818-A
SNPsrs11568818
Merged0
SNP id current11568818
Contextupstream_gene_variant
Intergenic1
Allele frequency0.56
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta1.1
%95 Ci[1.06-1.14]
PlatformIllumina [~ 2600000] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001942