SNP Detail For rs11568563
1.Mapping Information
Human SNP ID rs11568563
Human chromosome chr12
Human SNP position 21304500
Pig chromosome chr5
Pig SNP position 55441949
2.Annotation Information
PubMed ID21685912
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21685912
StudyIdentification of common variants influencing risk of the tauopathy progressive supranuclear palsy.
Disease/TraitProgressive supranuclear palsy
Initial sample1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls
Replication sample1,051 European ancestry cases, 3,560 European ancestry controls
Region12p12.1
Chromosome idchr12
Chromosome position21304500
Reported geneSLCO1A2
Mapped geneSLCO1A2
Upstream gene id
Downstream gene id
SNP gene ids6579
Upstream gene distance
Downstream gene distance
SNP risk allelers11568563-?
SNPsrs11568563
Merged0
SNP id current11568563
Contextmissense_variant
Intergenic0
Allele frequency0.95
P value0.00000007
Pvalue mlog7.15490195998574
P value text
Or beta1.47
%95 Ci[1.28-1.69]
PlatformIllumina [531451]
CNVN
Mapped traitProgressive supranuclear palsy
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_683
Study accessionGCST001116