SNP Detail For rs115648704
1.Mapping Information
Human SNP ID rs115648704
Human chromosome chr5
Human SNP position 43587726
Pig chromosome chr9
Pig SNP position 127067991
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region5p12
Chromosome idchr5
Chromosome position43587726
Reported geneAK096668
Mapped geneAMD1P3, NNT-AS1
Upstream gene id
Downstream gene id
SNP gene ids728931, 100652772
Upstream gene distance
Downstream gene distance
SNP risk allelers115648704-G
SNPsrs115648704
Merged0
SNP id current115648704
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.963
P value0.000001
Pvalue mlog6
P value text(AA)
Or beta0.075
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003265