Human SNP ID | rs115648704 |
---|---|
Human chromosome | chr5 |
Human SNP position | 43587726 |
Pig chromosome | chr9 |
Pig SNP position | 127067991 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1/FVC ratio in COPD |
Initial sample | 5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases |
Replication sample | NA |
Region | 5p12 |
Chromosome id | chr5 |
Chromosome position | 43587726 |
Reported gene | AK096668 |
Mapped gene | AMD1P3, NNT-AS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 728931, 100652772 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs115648704-G |
SNPs | rs115648704 |
Merged | 0 |
SNP id current | 115648704 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.963 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (AA) |
Or beta | 0.075 |
%95 Ci | NR unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | response to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST003265 |