SNP Detail For rs11543198
1.Mapping Information
Human SNP ID rs11543198
Human chromosome chr15
Human SNP position 74619987
Pig chromosome chr7
Pig SNP position 63594179
2.Annotation Information
PubMed ID25281661
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25281661
StudyGenome wide association study identified SNP on 15q24 associated with bladder cancer risk in Japanese population.
Disease/TraitBladder cancer
Initial sample531 Japanese ancestry cases, 5,581 Japanese ancestry conrols
Replication sample592 Japanese ancestry cases, 6,964 Japanese ancestry controls, 3,508 European ancestry cases, 5,101 European ancestry controls
Region15q24.1
Chromosome idchr15
Chromosome position74619987
Reported geneCLK3, CYP1A2
Mapped geneCLK3
Upstream gene id
Downstream gene id
SNP gene ids1198
Upstream gene distance
Downstream gene distance
SNP risk allelers11543198-G
SNPsrs11543198
Merged0
SNP id current11543198
Contextmissense_variant
Intergenic0
Allele frequency0.78
P value0.000000004
Pvalue mlog8.39794000867203
P value text(Japanese)
Or beta1.41
%95 Ci[1.26-1.59]
PlatformIllumina [554389]
CNVN
Mapped traitbladder carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000292
Study accessionGCST002645