Human SNP ID | rs11543198 |
---|---|
Human chromosome | chr15 |
Human SNP position | 74619987 |
Pig chromosome | chr7 |
Pig SNP position | 63594179 |
PubMed ID | 25281661 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25281661 |
Study | Genome wide association study identified SNP on 15q24 associated with bladder cancer risk in Japanese population. |
Disease/Trait | Bladder cancer |
Initial sample | 531 Japanese ancestry cases, 5,581 Japanese ancestry conrols |
Replication sample | 592 Japanese ancestry cases, 6,964 Japanese ancestry controls, 3,508 European ancestry cases, 5,101 European ancestry controls |
Region | 15q24.1 |
Chromosome id | chr15 |
Chromosome position | 74619987 |
Reported gene | CLK3, CYP1A2 |
Mapped gene | CLK3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1198 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11543198-G |
SNPs | rs11543198 |
Merged | 0 |
SNP id current | 11543198 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.78 |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | (Japanese) |
Or beta | 1.41 |
%95 Ci | [1.26-1.59] |
Platform | Illumina [554389] |
CNV | N |
Mapped trait | bladder carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000292 |
Study accession | GCST002645 |