SNP Detail For rs1154053
1.Mapping Information
Human SNP ID rs1154053
Human chromosome chr8
Human SNP position 4427868
Pig chromosome chr15
Pig SNP position 40743985
2.Annotation Information
PubMed ID22993228
JournalAnn Rheum Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/22993228
StudyNovel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.
Disease/TraitDisc degeneration (lumbar)
Initial sample4,683 European ancestry individuals
Replication sampleNA
Region8p23.2
Chromosome idchr8
Chromosome position4427868
Reported geneintergenic
Mapped geneCSMD1
Upstream gene id
Downstream gene id
SNP gene ids64478
Upstream gene distance
Downstream gene distance
SNP risk allelers1154053-C
SNPsrs1154053
Merged0
SNP id current1154053
Contextintron_variant
Intergenic0
Allele frequency0.17
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta0.13
%95 Ci[0.075-0.185] unit decrease
PlatformAffymetrix, Illumina [2552511] (imputed)
CNVN
Mapped traitlumbar disc degeneration
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004994
Study accessionGCST001687