Human SNP ID | rs1153858 |
---|---|
Human chromosome | chr15 |
Human SNP position | 45360505 |
Pig chromosome | chr1 |
Pig SNP position | 140844381 |
PubMed ID | 24047826 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24047826 |
Study | Genome-wide association study identifies 3 genomic loci significantly associated with serum levels of homoarginine: the AtheroRemo Consortium. |
Disease/Trait | Homoarginine levels |
Initial sample | 5,143 European ancestry individuals |
Replication sample | 1,474 European ancestry individuals |
Region | 15q21.1 |
Chromosome id | chr15 |
Chromosome position | 45360505 |
Reported gene | GATM |
Mapped gene | LOC100533853 - GATM |
Upstream gene id | 100533853 |
Downstream gene id | 2628 |
SNP gene ids | |
Upstream gene distance | 27881 |
Downstream gene distance | 619 |
SNP risk allele | rs1153858-C |
SNPs | rs1153858 |
Merged | 0 |
SNP id current | 1153858 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.72 |
P value | 1E-45 |
Pvalue mlog | 45 |
P value text | |
Or beta | 0.271 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix, Illumina [2543887] (imputed) |
CNV | N |
Mapped trait | serum homoarginine measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005421 |
Study accession | GCST002196 |