SNP Detail For rs1153858
1.Mapping Information
Human SNP ID rs1153858
Human chromosome chr15
Human SNP position 45360505
Pig chromosome chr1
Pig SNP position 140844381
2.Annotation Information
PubMed ID24047826
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24047826
StudyGenome-wide association study identifies 3 genomic loci significantly associated with serum levels of homoarginine: the AtheroRemo Consortium.
Disease/TraitHomoarginine levels
Initial sample5,143 European ancestry individuals
Replication sample1,474 European ancestry individuals
Region15q21.1
Chromosome idchr15
Chromosome position45360505
Reported geneGATM
Mapped geneLOC100533853 - GATM
Upstream gene id100533853
Downstream gene id2628
SNP gene ids
Upstream gene distance27881
Downstream gene distance619
SNP risk allelers1153858-C
SNPsrs1153858
Merged0
SNP id current1153858
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.72
P value1E-45
Pvalue mlog45
P value text
Or beta0.271
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [2543887] (imputed)
CNVN
Mapped traitserum homoarginine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005421
Study accessionGCST002196