SNP Detail For rs11536940
1.Mapping Information
Human SNP ID rs11536940
Human chromosome chr20
Human SNP position 38349233
Pig chromosome chr17
Pig SNP position 46840890
2.Annotation Information
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (DPAL)
Initial sampleup to 2,501 European ancestry individuals
Replication sampleNA
Region20q11.23
Chromosome idchr20
Chromosome position38349233
Reported geneLBP
Mapped geneLBP
Upstream gene id
Downstream gene id
SNP gene ids3929
Upstream gene distance
Downstream gene distance
SNP risk allelers11536940-A
SNPsrs11536940
Merged0
SNP id current11536940
Contextintron_variant
Intergenic0
Allele frequency0.06
P value0.000002
Pvalue mlog5.69897000433601
P value text(Age 20-60 years)
Or beta0.384
%95 Ci[0.23-0.54] unit increase
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002129