Human SNP ID | rs11536940 |
---|---|
Human chromosome | chr20 |
Human SNP position | 38349233 |
Pig chromosome | chr17 |
Pig SNP position | 46840890 |
PubMed ID | 24024966 |
---|---|
Journal | J Clin Periodontol |
Link | www.ncbi.nlm.nih.gov/pubmed/24024966 |
Study | Genome-wide association study of chronic periodontitis in a general German population. |
Disease/Trait | Periodontitis (DPAL) |
Initial sample | up to 2,501 European ancestry individuals |
Replication sample | NA |
Region | 20q11.23 |
Chromosome id | chr20 |
Chromosome position | 38349233 |
Reported gene | LBP |
Mapped gene | LBP |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3929 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs11536940-A |
SNPs | rs11536940 |
Merged | 0 |
SNP id current | 11536940 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.06 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Age 20-60 years) |
Or beta | 0.384 |
%95 Ci | [0.23-0.54] unit increase |
Platform | Affymetrix, Illumina [up to 17585496] (imputed) |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST002129 |