SNP Detail For rs115329265
1.Mapping Information
Human SNP ID rs115329265
Human chromosome chr6
Human SNP position 28744470
Pig chromosome chr7
Pig SNP position 24373749
2.Annotation Information
PubMed ID25056061
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25056061
StudyBiological insights from 108 schizophrenia-associated genetic loci.
Disease/TraitSchizophrenia
Initial sample32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls
Replication sample1,513 European ancestry cases, 66,236 European ancestry controls
Region6p22.1
Chromosome idchr6
Chromosome position28744470
Reported geneintergenic
Mapped geneTRR-CCG1-2 - TRK-TTT7-1
Upstream gene id100189365
Downstream gene id100189332
SNP gene ids
Upstream gene distance1446
Downstream gene distance3274
SNP risk allelers115329265-A
SNPsrs115329265
Merged1
SNP id current115329265
Contextintergenic_variant
Intergenic1
Allele frequency0.85
P value3E-31
Pvalue mlog30.5228787452803
P value text
Or beta1.205
%95 Ci[1.168-1.244]
PlatformAffymetrix, Illumina [9005918] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002539