Human SNP ID | rs115306967 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32433162 |
Pig chromosome | chr7 |
Pig SNP position | 29032440 |
PubMed ID | 25217961 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25217961 |
Study | A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer. |
Disease/Trait | Prostate cancer |
Initial sample | 34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls |
Replication sample | NA |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32433162 |
Reported gene | HLA-DRB6 |
Mapped gene | BTNL2 - HLA-DRA |
Upstream gene id | 56244 |
Downstream gene id | 3122 |
SNP gene ids | |
Upstream gene distance | 24283 |
Downstream gene distance | 6680 |
SNP risk allele | rs115306967-G |
SNPs | rs115306967 |
Merged | 1 |
SNP id current | 115306967 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.65 |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | |
Or beta | 1.06 |
%95 Ci | [1.05-1.10] |
Platform | Affymetrix, Illumina [up to 16852405] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST002606 |
PubMed ID | 25217961 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25217961 |
Study | A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer. |
Disease/Trait | Prostate cancer |
Initial sample | 34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls |
Replication sample | NA |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32433162 |
Reported gene | HLA-DRB6 |
Mapped gene | BTNL2 - HLA-DRA |
Upstream gene id | 56244 |
Downstream gene id | 3122 |
SNP gene ids | |
Upstream gene distance | 24283 |
Downstream gene distance | 6680 |
SNP risk allele | rs115306967-G |
SNPs | rs115306967 |
Merged | 1 |
SNP id current | 115306967 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.65 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | (EA) |
Or beta | 1.08 |
%95 Ci | [1.06-1.11] |
Platform | Affymetrix, Illumina [up to 16852405] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST002606 |