SNP Detail For rs115306967
1.Mapping Information
Human SNP ID rs115306967
Human chromosome chr6
Human SNP position 32433162
Pig chromosome chr7
Pig SNP position 29032440
2.Annotation Information
PubMed ID25217961
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25217961
StudyA meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.
Disease/TraitProstate cancer
Initial sample34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls
Replication sampleNA
Region6p21.32
Chromosome idchr6
Chromosome position32433162
Reported geneHLA-DRB6
Mapped geneBTNL2 - HLA-DRA
Upstream gene id56244
Downstream gene id3122
SNP gene ids
Upstream gene distance24283
Downstream gene distance6680
SNP risk allelers115306967-G
SNPsrs115306967
Merged1
SNP id current115306967
Contextintron_variant
Intergenic1
Allele frequency0.65
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta1.06
%95 Ci[1.05-1.10]
PlatformAffymetrix, Illumina [up to 16852405] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002606
PubMed ID25217961
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25217961
StudyA meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.
Disease/TraitProstate cancer
Initial sample34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls
Replication sampleNA
Region6p21.32
Chromosome idchr6
Chromosome position32433162
Reported geneHLA-DRB6
Mapped geneBTNL2 - HLA-DRA
Upstream gene id56244
Downstream gene id3122
SNP gene ids
Upstream gene distance24283
Downstream gene distance6680
SNP risk allelers115306967-G
SNPsrs115306967
Merged1
SNP id current115306967
Contextintron_variant
Intergenic1
Allele frequency0.65
P value0.000000003
Pvalue mlog8.52287874528033
P value text(EA)
Or beta1.08
%95 Ci[1.06-1.11]
PlatformAffymetrix, Illumina [up to 16852405] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002606