SNP Detail For rs1152846
1.Mapping Information
Human SNP ID rs1152846
Human chromosome chr3
Human SNP position 188703109
Pig chromosome chr13
Pig SNP position 135475322
2.Annotation Information
PubMed ID19851299
JournalObesity (Silver Spring)
Linkwww.ncbi.nlm.nih.gov/pubmed/19851299
StudyLinkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.
Disease/TraitWeight
Initial sampleUp to 3,925 European individuals
Replication sampleNA
Region3q28
Chromosome idchr3
Chromosome position188703109
Reported geneNR
Mapped geneLPP
Upstream gene id
Downstream gene id
SNP gene ids4026
Upstream gene distance
Downstream gene distance
SNP risk allelers1152846-G
SNPsrs1152846
Merged0
SNP id current1152846
Contextintron_variant
Intergenic0
Allele frequency0.77
P value0.000006
Pvalue mlog5.22184874961635
P value text(females + males)
Or beta1.7
%95 Ci[NR] kg decrease
PlatformIllumina [318237]
CNVN
Mapped traitbody weight
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004338
Study accessionGCST000511
PubMed ID19851299
JournalObesity (Silver Spring)
Linkwww.ncbi.nlm.nih.gov/pubmed/19851299
StudyLinkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.
Disease/TraitBody mass index
Initial sample1,079 South Tyrolian individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals
Replication sampleNA
Region3q28
Chromosome idchr3
Chromosome position188703109
Reported geneNR
Mapped geneLPP
Upstream gene id
Downstream gene id
SNP gene ids4026
Upstream gene distance
Downstream gene distance
SNP risk allelers1152846-G
SNPsrs1152846
Merged0
SNP id current1152846
Contextintron_variant
Intergenic0
Allele frequency0.77
P value0.000003
Pvalue mlog5.52287874528033
P value text(females +males)
Or beta0.09
%95 Ci[NR] kg decrease
PlatformIllumina [318237]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST000512