SNP Detail For rs1150754
1.Mapping Information
Human SNP ID rs1150754
Human chromosome chr6
Human SNP position 32082981
Pig chromosome chr7
Pig SNP position 27956046
2.Annotation Information
PubMed ID21408207
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21408207
StudyDifferential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.
Disease/TraitSystemic lupus erythematosus
Initial sample811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls
Replication sampleNA
Region6p21.33
Chromosome idchr6
Chromosome position32082981
Reported geneTNXB
Mapped geneTNXB
Upstream gene id
Downstream gene id
SNP gene ids7148
Upstream gene distance
Downstream gene distance
SNP risk allelers1150754-A
SNPsrs1150754
Merged0
SNP id current1150754
Contextintron_variant
Intergenic0
Allele frequency0.13
P value6E-29
Pvalue mlog28.2218487496163
P value text(anti-dsDNA +)
Or beta2.21
%95 Ci[1.93-2.53]
PlatformIllumina [421318] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST000996