Human SNP ID | rs1150754 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32082981 |
Pig chromosome | chr7 |
Pig SNP position | 27956046 |
PubMed ID | 21408207 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21408207 |
Study | Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls |
Replication sample | NA |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 32082981 |
Reported gene | TNXB |
Mapped gene | TNXB |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7148 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1150754-A |
SNPs | rs1150754 |
Merged | 0 |
SNP id current | 1150754 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.13 |
P value | 6E-29 |
Pvalue mlog | 28.2218487496163 |
P value text | (anti-dsDNA +) |
Or beta | 2.21 |
%95 Ci | [1.93-2.53] |
Platform | Illumina [421318] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST000996 |