SNP Detail For rs114846327
1.Mapping Information
Human SNP ID rs114846327
Human chromosome chr5
Human SNP position 36436477
Pig chromosome chr16
Pig SNP position 22723940
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitPR interval in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region5p13.2
Chromosome idchr5
Chromosome position36436477
Reported geneNR
Mapped geneLOC105374725 - SLC1A3
Upstream gene id105374725
Downstream gene id6507
SNP gene ids
Upstream gene distance98309
Downstream gene distance169878
SNP risk allelers114846327-?
SNPsrs114846327
Merged0
SNP id current114846327
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitPR interval, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002279