Human SNP ID | rs114846327 |
---|---|
Human chromosome | chr5 |
Human SNP position | 36436477 |
Pig chromosome | chr16 |
Pig SNP position | 22723940 |
PubMed ID | 24324551 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24324551 |
Study | Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. |
Disease/Trait | PR interval in Tripanosoma cruzi seropositivity |
Initial sample | 580 Brazilian ancestry individuals |
Replication sample | NA |
Region | 5p13.2 |
Chromosome id | chr5 |
Chromosome position | 36436477 |
Reported gene | NR |
Mapped gene | LOC105374725 - SLC1A3 |
Upstream gene id | 105374725 |
Downstream gene id | 6507 |
SNP gene ids | |
Upstream gene distance | 98309 |
Downstream gene distance | 169878 |
SNP risk allele | rs114846327-? |
SNPs | rs114846327 |
Merged | 0 |
SNP id current | 114846327 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix [5486770] (imputed) |
CNV | N |
Mapped trait | PR interval, Trypanosoma cruzi seropositivity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530 |
Study accession | GCST002279 |