SNP Detail For rs1145652
1.Mapping Information
Human SNP ID rs1145652
Human chromosome chr5
Human SNP position 165337081
Pig chromosome chr16
Pig SNP position 63303177
2.Annotation Information
PubMed ID21829377
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21829377
StudyGenetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitPhospholipid levels (plasma)
Initial sample8,866 European ancestry individuals
Replication sampleNA
Region5q34
Chromosome idchr5
Chromosome position165337081
Reported geneMAT2B
Mapped geneLOC105377701 - LOC105377704
Upstream gene id105377701
Downstream gene id105377704
SNP gene ids
Upstream gene distance93723
Downstream gene distance506154
SNP risk allelers1145652-A
SNPsrs1145652
Merged0
SNP id current1145652
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000008
Pvalue mlog7.09691001300805
P value text(EPA)
Or beta0.04
%95 Ci[NR] % increase
PlatformAffymetrix, Illumina [NR]
CNVN
Mapped traitphospholipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004639
Study accessionGCST001178