Human SNP ID | rs1145652 |
---|---|
Human chromosome | chr5 |
Human SNP position | 165337081 |
Pig chromosome | chr16 |
Pig SNP position | 63303177 |
PubMed ID | 21829377 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21829377 |
Study | Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Phospholipid levels (plasma) |
Initial sample | 8,866 European ancestry individuals |
Replication sample | NA |
Region | 5q34 |
Chromosome id | chr5 |
Chromosome position | 165337081 |
Reported gene | MAT2B |
Mapped gene | LOC105377701 - LOC105377704 |
Upstream gene id | 105377701 |
Downstream gene id | 105377704 |
SNP gene ids | |
Upstream gene distance | 93723 |
Downstream gene distance | 506154 |
SNP risk allele | rs1145652-A |
SNPs | rs1145652 |
Merged | 0 |
SNP id current | 1145652 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000008 |
Pvalue mlog | 7.09691001300805 |
P value text | (EPA) |
Or beta | 0.04 |
%95 Ci | [NR] % increase |
Platform | Affymetrix, Illumina [NR] |
CNV | N |
Mapped trait | phospholipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004639 |
Study accession | GCST001178 |