SNP Detail For rs114090659
1.Mapping Information
Human SNP ID rs114090659
Human chromosome chr6
Human SNP position 30973212
Pig chromosome chr7
Pig SNP position 27388092
2.Annotation Information
PubMed ID26502338
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26502338
StudyGenetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.
Disease/TraitSystemic lupus erythematosus
Initial sample5,201 European ancestry cases, 9,066 European ancestry controls
Replication sampleNA
Region6p21.33
Chromosome idchr6
Chromosome position30973212
Reported geneDPCR, MUC21
Mapped geneLOC102723346 - MUC21
Upstream gene id102723346
Downstream gene id394263
SNP gene ids
Upstream gene distance17492
Downstream gene distance10496
SNP risk allelers114090659-C
SNPsrs114090659
Merged
SNP id current114090659
Contextintergenic_variant
Intergenic1
Allele frequency
P value6E-92
Pvalue mlog91.2218487496163
P value text(conditional)
Or beta1.99
%95 Ci[NR]
PlatformIllumina [> 644674] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003156