Human SNP ID | rs114090659 |
---|---|
Human chromosome | chr6 |
Human SNP position | 30973212 |
Pig chromosome | chr7 |
Pig SNP position | 27388092 |
PubMed ID | 26502338 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26502338 |
Study | Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 5,201 European ancestry cases, 9,066 European ancestry controls |
Replication sample | NA |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 30973212 |
Reported gene | DPCR, MUC21 |
Mapped gene | LOC102723346 - MUC21 |
Upstream gene id | 102723346 |
Downstream gene id | 394263 |
SNP gene ids | |
Upstream gene distance | 17492 |
Downstream gene distance | 10496 |
SNP risk allele | rs114090659-C |
SNPs | rs114090659 |
Merged | |
SNP id current | 114090659 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 6E-92 |
Pvalue mlog | 91.2218487496163 |
P value text | (conditional) |
Or beta | 1.99 |
%95 Ci | [NR] |
Platform | Illumina [> 644674] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST003156 |