SNP Detail For rs113288656
1.Mapping Information
Human SNP ID rs113288656
Human chromosome chrX
Human SNP position 22417389
Pig chromosome chrX
Pig SNP position 19769462
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
RegionXp22.11
Chromosome idchrX
Chromosome position22417389
Reported geneNR
Mapped genePTCHD1-AS
Upstream gene id
Downstream gene id
SNP gene ids100873065
Upstream gene distance
Downstream gene distance
SNP risk allelers113288656-?
SNPsrs113288656
Merged
SNP id current113288656
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text(AA)
Or beta1.1184
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957