SNP Detail For rs1129700
1.Mapping Information
Human SNP ID rs1129700
Human chromosome chr16
Human SNP position 29906713
Pig chromosome chr3
Pig SNP position 18632975
2.Annotation Information
PubMed ID25231870
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25231870
StudyParent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
Disease/TraitMenarche (age at onset)
Initial sampleUp to 182,413 European ancestry females
Replication sampleNA
Region16p11.2
Chromosome idchr16
Chromosome position29906713
Reported geneKCTD13, TBX6
Mapped geneASPHD1, KCTD13
Upstream gene id
Downstream gene id
SNP gene ids253982, 253980
Upstream gene distance
Downstream gene distance
SNP risk allelers1129700-T
SNPsrs1129700
Merged0
SNP id current1129700
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.44
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta0.03
%95 Ci[0.02-0.04] unit increase
PlatformAffymetrix, Illumina [2441815] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST002541