Human SNP ID | rs1129700 |
---|---|
Human chromosome | chr16 |
Human SNP position | 29906713 |
Pig chromosome | chr3 |
Pig SNP position | 18632975 |
PubMed ID | 25231870 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25231870 |
Study | Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. |
Disease/Trait | Menarche (age at onset) |
Initial sample | Up to 182,413 European ancestry females |
Replication sample | NA |
Region | 16p11.2 |
Chromosome id | chr16 |
Chromosome position | 29906713 |
Reported gene | KCTD13, TBX6 |
Mapped gene | ASPHD1, KCTD13 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 253982, 253980 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1129700-T |
SNPs | rs1129700 |
Merged | 0 |
SNP id current | 1129700 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.44 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 0.03 |
%95 Ci | [0.02-0.04] unit increase |
Platform | Affymetrix, Illumina [2441815] (imputed) |
CNV | N |
Mapped trait | age at menarche |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004703 |
Study accession | GCST002541 |